Computing Resources: Difference between revisions
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(Disk 7TB) |
(Formatting) |
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| Line 85: | Line 85: | ||
sudo mkfs.ext4 /dev/fedora/lvol0 | sudo mkfs.ext4 /dev/fedora/lvol0 | ||
mke2fs 1.47.0 (5-Feb-2023) | mke2fs 1.47.0 (5-Feb-2023) | ||
Discarding device blocks: done | Discarding device blocks: done | ||
Creating filesystem with 1870995456 4k blocks and 233877504 inodes | Creating filesystem with 1870995456 4k blocks and 233877504 inodes | ||
Filesystem UUID: ac2a59ab-e038-4013-aeb6-bb3889b6720e | Filesystem UUID: ac2a59ab-e038-4013-aeb6-bb3889b6720e | ||
Superblock backups stored on blocks: | Superblock backups stored on blocks: | ||
32768, 98304, 163840, 229376, 294912, 819200, 884736, 1605632, 2654208, | 32768, 98304, 163840, 229376, 294912, 819200, 884736, 1605632, 2654208, | ||
4096000, 7962624, 11239424, 20480000, 23887872, 71663616, 78675968, | |||
102400000, 214990848, 512000000, 550731776, 644972544 | 102400000, 214990848, 512000000, 550731776, 644972544 | ||
Allocating group tables: done | Allocating group tables: done | ||
Writing inode tables: done | Writing inode tables: done | ||
Creating journal (262144 blocks): done | Creating journal (262144 blocks): done | ||
Writing superblocks and filesystem accounting information: done | Writing superblocks and filesystem accounting information: done | ||
Add the following line to /etc/fstab | Add the following line to /etc/fstab | ||
/dev/fedora/lvol0 /data ext4 defaults 0 2 | /dev/fedora/lvol0 /data ext4 defaults 0 2 | ||
Test with sudo mount -a | Test with | ||
sudo mount -a | |||
Revision as of 14:54, 14 April 2025
| Type of Data | Project | Lab | 2021 | 2022 | 2023 | 2024 | 2025 |
|---|---|---|---|---|---|---|---|
| Raw MRD (MiSeq) | Routine | Molecular Biology | |||||
| Processed MRD (Vidjil) | Routine | Molecular Biology | 0.05 | 0.07 | 0.20 | 0.30 | 0.40 |
| Exome | Precision Medicine | Epigenomics | |||||
| ctDNA | Circular Tumoral DNA | Molecular Biology | |||||
| Methylome | Precision Medicine | Epigenomics | |||||
| Mass spectra | DESI | Leukemia Biology / Pathology | 4 | - | - | - | - |
| Imaging | Drug Screening | Leukemia Biology | 15 | 25 | |||
| Panel | Drug Screening | Leukemia Biology | 0.4 | ||||
| Methylome | Drug Screening | Leukemia Biology | 0.03 | ||||
| RNASeq | Drug Screening | Leukemia Biology | 0.4 | ||||
| Methylome | FINEP | All | 0.5 | ||||
| RNASeq | FINEP | All | 4 | ||||
| Exome | FINEP | All | 8 | ||||
| Total | 4.05 | 0.07 | 15.2 | 26.3 | 12.9 |
| Name | RAM (GB) | Disk (TB) | Processors |
|---|---|---|---|
| Vidjil | 12 | 1.0 | 16 |
| RNASeq | 64 | 1.0 | 16 |
| RStudio | 65 | 4.0 | 1 |
| Bioterium | 12 | 0.1 | 4 |
| Total | 224 | 12.0 | 24 |
| Name | IP | RAM (GB) | Disk (TB) | Cores | Use |
|---|---|---|---|---|---|
| Node1 | 10.10.70.59 | 256 | 7 | 48 | Migo |
| Node2 | 10.10.70.61 | 256 | 7 | 48 | Drug Screening Dashboards |
| Node3 | 10.10.70.62 | 256 | 7 | 48 | Protein 3D Modeling |
| Node4 | 10.10.70.63 | 256 | 7 | 48 | Drug Screening Processing |
| Tirana | 10.10.70.64 | 128 | 65 | 80 | Genomic analyses |
Making entire 7 TB disk available on node1-4:
sudo lvm
lvm> vgs
VG #PV #LV #SN Attr VSize VFree fedora 1 1 0 wz--n- 6.98t 6.97t
lvm> lvcreate -L 6.97t fedora
Rounding up size to full physical extent 6.97 TiB Logical volume "lvol0" created.
Quit lvm
sudo mkdir -vp /data
sudo mkfs.ext4 /dev/fedora/lvol0
mke2fs 1.47.0 (5-Feb-2023) Discarding device blocks: done Creating filesystem with 1870995456 4k blocks and 233877504 inodes Filesystem UUID: ac2a59ab-e038-4013-aeb6-bb3889b6720e Superblock backups stored on blocks:
32768, 98304, 163840, 229376, 294912, 819200, 884736, 1605632, 2654208,
4096000, 7962624, 11239424, 20480000, 23887872, 71663616, 78675968,
102400000, 214990848, 512000000, 550731776, 644972544
Allocating group tables: done Writing inode tables: done Creating journal (262144 blocks): done Writing superblocks and filesystem accounting information: done
Add the following line to /etc/fstab
/dev/fedora/lvol0 /data ext4 defaults 0 2
Test with
sudo mount -a