Computing Resources

CPB Storage Requirements in TB (terabytes)

Type of Data	Project	Lab	2021	2022	2023	2024	2025
Raw MRD (MiSeq)	Routine	Molecular Biology
Processed MRD (Vidjil)	Routine	Molecular Biology	0.05	0.07	0.20	0.30	0.40
Exome	Precision Medicine	Epigenomics
ctDNA	Circular Tumoral DNA	Molecular Biology
Methylome	Precision Medicine	Epigenomics
Mass spectra	DESI	Leukemia Biology / Pathology	4	-	-	-	-
Imaging	Drug Screening	Leukemia Biology			15	25
Panel	Drug Screening	Leukemia Biology				0.4
Methylome	Drug Screening	Leukemia Biology				0.03
RNASeq	Drug Screening	Leukemia Biology				0.4
Methylome	FINEP	All					0.5
RNASeq	FINEP	All					4
Exome	FINEP	All					8
Total			4.05	0.07	15.2	26.3	12.9

Virtual Machines for Host: Machine 60

Name	IP	RAM (GB)	Disk (TB)	Processors
Vidjil	200.136.108.242	12	1.0	16
RNASeq	10.10.70.114	64	1.0	16
RStudio	10.10.70.50	65	4.0	1
Bioterium	192.168.200.241	12	0.1	4
Total		224	12.0	24

New Machines Bought in 2024

Name	IP	RAM (GB)	Disk (TB)	Cores	Current Use	Planned, Additional Use
Node1	10.10.70.59	256	7	48	Migo	RNA Panel analysis
QNAP Storage	10.10.70.60	4	113	4	Backup
Node2	10.10.70.61	256	7	48	Drug Screening Dashboards & Database
Node3	10.10.70.62	256	7	48	BRB Seq analysis
Node4	10.10.70.63	256	7	48	Drug Screening Processing	CPB Proxy
Tirana	10.10.70.64	128	65	80	Genomic analyses	Wiki, Vidjil Background

CPB Servers

Name	Acquired	IP	RAM (GB)	Disk (TB)	Cores	Current Use	Planned, Additional Use
Node1	2024	10.10.70.59	256	7	48	Migo	RNA Panel analysis
QNAP Storage	2024	10.10.70.60	4	113	4	Backup
Node2	2024	10.10.70.61	256	7	48	Drug Screening Dashboards & Database
Node3	2024	10.10.70.62	256	7	48	BRB Seq analysis
Node4	2024	10.10.70.63	256	7	48	Drug Screening Processing	CPB Proxy
Tirana	2024	10.10.70.64	128	65	80	Genomic analyses	Wiki, Vidjil Background
Pesquisa-113	Long ago	10.10.50.113	4	0.5	4	Wiki, MySQL
CPB (oem-desktop)	Loan	200.136.108.111	4	0.5	4	CPB Reverse Proxy	Will be returned
Caragua	2019	200.136.108.250	16	1	8	REDCap

Making entire 7 TB disk available on node1-4:

sudo lvm

lvm> vgs

 VG     #PV #LV #SN Attr   VSize VFree
 fedora   1   1   0 wz--n- 6.98t 6.97t

lvm> lvcreate -L 6.97t fedora

 Rounding up size to full physical extent 6.97 TiB
 Logical volume "lvol0" created.

Quit lvm

sudo mkdir -vp /data

sudo mkfs.ext4 /dev/fedora/lvol0

 mke2fs 1.47.0 (5-Feb-2023)
 Discarding device blocks: done                            
 Creating filesystem with 1870995456 4k blocks and 233877504 inodes
 Filesystem UUID: ac2a59ab-e038-4013-aeb6-bb3889b6720e
 Superblock backups stored on blocks: 
   32768, 98304, 163840, 229376, 294912, 819200, 884736, 1605632, 2654208, 
   4096000, 7962624, 11239424, 20480000, 23887872, 71663616, 78675968, 
   102400000, 214990848, 512000000, 550731776, 644972544
 Allocating group tables: done                            
 Writing inode tables: done                            
 Creating journal (262144 blocks): done
 Writing superblocks and filesystem accounting information: done

Add the following line to /etc/fstab

 /dev/fedora/lvol0 /data ext4 defaults 0 2

Test with

 sudo mount -a