Vidjil: Difference between revisions

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* [[Vidjil backup|restore backup]]
* [[Vidjil backup|restore backup]]
* [[Restarting Vidjil|restart Vidjil]]
* [[Restarting Vidjil|restart Vidjil]]
* renew SSL certificate (Let's Encrypt)
* [[Renewing Vidjil's SSL Certificate|renew SSL certificate]]
* keep it up-to-date with the Lille version
* keep it up-to-date with the Lille version
* develop specific addons for our own use
* develop specific addons for our own use
To renew the certificates:
* this operation must be done between 1 and 8 days before expiration.
* certified machine name: <code>vidjil.boldrini.org.br</code>
* go to the <docker-dir> and impersonate a super-user: <code>sudo su joao.m</code> (<docker-dir> is currently <code>/home/vidjil/code/2020-vidjil/docker</code>).
* do <code>docker-compose -f docker-compose-wrapper.yml down</code> to prevent Vidjil from disturbing standalone verification.
* renew the certificate:
<blockquote>
<code>sudo certbot certonly --standalone -d vidjil.boldrini.org.br</code>
</blockquote>
* issue the extra commands below to make sure the renewal is seen by Vidjil:
<blockquote>
<code>sudo cp /etc/letsencrypt/live/vidjil.boldrini.org.br/fullchain.pem /home/vidjil/code/2020-vidjil/docker/vidjil-client/ssl/fullchain.pem</code>
<code>sudo cp /etc/letsencrypt/live/vidjil.boldrini.org.br/privkey.pem  /home/vidjil/code/2020-vidjil/docker/vidjil-client/ssl/privkey.pem</code>
</blockquote>
* make sure file privkey.pem has permissions 0600 and owner root
* do <code>docker-compose -f docker-compose-wrapper.yml up -d</code> to restart Vidjil.
* visit <code>vidjil.boldrini.org.br</code> to confirm the new certificate in on.
* mark on your calendar a date for the next renewal.

Latest revision as of 11:39, 11 January 2024

Vidjil is a software developed in Lille, France devoted to the analysis of V(D)J rearrangements. It is freely available and we have installed a production version and a number of test versions at the Boldrini Research Center (BRC). The production instance runs in a dedicated server.

Maintenance tasks:

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