Vidjil: Difference between revisions

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Maintenance tasks:
Maintenance tasks:


* perform backup
* [[Vidjil backup|perform backup]]
* renew SSL certificate (Let's Encrypt)
* [[Vidjil backup|restore backup]]
* [[Restarting Vidjil|restart Vidjil]]
* [[Renewing Vidjil's SSL Certificate|renew SSL certificate]]
* keep it up-to-date with the Lille version
* keep it up-to-date with the Lille version
* develop specific addons for our own use
* develop specific addons for our own use
To renew the certificates:
* this operation must be done between 1 and 8 days before expiration.
* certificed machine name: vidjil.boldrini.org.br
* go to the <docker-dir> and impersonate a super-user: 'sudo su joao.m' (<docker-dir> is probably /home/vidjil/code/2020-vidjil/docker).
* do 'docker-compose -f <docker-compose-yml> down' to prevent Vidjil from disturbing standalone verification.  Use the most recent file of the form docker-compose-boldrini-YYYY-MM-DD.yml as <docker-compose-yml>.
* renew the certificate:
<blockquote>
<code>sudo certbot certonly --standalone -d vidjil.boldrini.org.br</code>
</blockquote>
* issue the extra commands below to make sure the renewal is seen by Vidjil:
<blockquote>
<code>sudo cp /etc/letsencrypt/live/vidjil.boldrini.org.br/fullchain.pem /home/vidjil/code/2020-vidjil/docker/vidjil-client/ssl/fullchain.pem</code>
<code>sudo cp /etc/letsencrypt/live/vidjil.boldrini.org.br/privkey.pem  /home/vidjil/code/2020-vidjil/docker/vidjil-client/ssl/privkey.pem</code>
</blockquote>
* make sure file privkey.pem has permissions 0600 and owner root:root
* do 'docker-compose -f <docker-compose-yml> up -d' to restart Vidjil.  Use the same yml file as above.
* visit vidjil.boldrini.org.br to confirm the new certificate in on.
* mark your calendar a date for the next renewal.

Latest revision as of 11:39, 11 January 2024

Vidjil is a software developed in Lille, France devoted to the analysis of V(D)J rearrangements. It is freely available and we have installed a production version and a number of test versions at the Boldrini Research Center (BRC). The production instance runs in a dedicated server.

Maintenance tasks:

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