Vidjil backup: Difference between revisions
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Storage directory structure: | ==Storage directory structure:== | ||
* keep the Vidjil structure | * keep the Vidjil structure | ||
* backup the data directory, including fastq files, analyses, and .vidjil files | * backup the data directory, including fastq files, analyses, and .vidjil files | ||
| Line 8: | Line 8: | ||
* no need to store raw data from sequencer if not analyzed by Vidjil | * no need to store raw data from sequencer if not analyzed by Vidjil | ||
Backup policy: | ==Backup policy:== | ||
* use external hard drives, preferably with 5TB each or more | * use external hard drives, preferably with 5TB each or more | ||
* backup Vidjil's data dir | * backup Vidjil's data dir | ||
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* Vidjil Backup Restore Day: every year, on the second Wednesday of July | * Vidjil Backup Restore Day: every year, on the second Wednesday of July | ||
Backup restore: | ==Backup restore:== | ||
* Have an ISO ready for Ubuntu server (latest LTS) | * Have an ISO ready for Ubuntu server (latest LTS) | ||
* Create a new HyperV Generation 2 virtual machine in host 60, with 8GB of RAM, WAN2 network, with enough disk space to hold the data | * Create a new HyperV Generation 2 virtual machine in host 60, with 8GB of RAM, WAN2 network, with enough disk space to hold the data | ||
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* Connect to the machine and start it | * Connect to the machine and start it | ||
* Install Ubuntu; you may have to Restart the machine a few times | * Install Ubuntu; you may have to Restart the machine a few times | ||
* | * Net config: | ||
- Subnet: 10.10.70.0/24 | |||
- Address: 10.10.70.51 (same as dev-vidjil) | |||
- Gateway: 10.10.70.1 | |||
- Name servers: 10.10.70.10, 8.8.8.8 | |||
- Search domains: (empty) | |||
* When asked, accept ssh and docker installation | |||
* After installation is complete, remove the DVD and restart | |||
* Clone the Vidjil wrapper code | * Clone the Vidjil wrapper code | ||
* Restore Docker images (docker load client & server) | * Restore Docker images (docker load client & server) | ||
Latest revision as of 11:01, 28 December 2023
Storage directory structure:
- keep the Vidjil structure
- backup the data directory, including fastq files, analyses, and .vidjil files
- check old backups to make sure there's only one backup storage
Files before 2020:
- store in external hard drives
- no need to store raw data from sequencer if not analyzed by Vidjil
Backup policy:
- use external hard drives, preferably with 5TB each or more
- backup Vidjil's data dir
- backup Vidjil's mysql dump
- code is backed up by git
- Vidjil Backup Restore Day: every year, on the second Wednesday of July
Backup restore:
- Have an ISO ready for Ubuntu server (latest LTS)
- Create a new HyperV Generation 2 virtual machine in host 60, with 8GB of RAM, WAN2 network, with enough disk space to hold the data
- Say you will install the OS later
- Add a DVD unit to the VM at Configurations pointing to the Ubuntu ISO
- Change to Microsoft UEFI certificate at Configuration/Security
- Connect to the machine and start it
- Install Ubuntu; you may have to Restart the machine a few times
- Net config:
- Subnet: 10.10.70.0/24 - Address: 10.10.70.51 (same as dev-vidjil) - Gateway: 10.10.70.1 - Name servers: 10.10.70.10, 8.8.8.8 - Search domains: (empty)
- When asked, accept ssh and docker installation
- After installation is complete, remove the DVD and restart
- Clone the Vidjil wrapper code
- Restore Docker images (docker load client & server)
- Configure .env and propagate
- Start Vidjil wrapper and test
- Restore data dir, except uploads
- Restore uploads and test
- Restore mysql dump