Computing Resources: Difference between revisions
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(Fixing column seps) |
(Bioterium IP) |
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| (7 intermediate revisions by the same user not shown) | |||
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|+ Virtual Machines for Host: Machine 60 | |+ Virtual Machines for Host: Machine 60 | ||
|- | |- | ||
! Name !! RAM (GB) !! Disk (TB) !! Processors | ! Name !! IP !! RAM (GB) !! Disk (TB) !! Processors | ||
|- | |- | ||
| Vidjil || 12 || 1.0 || 16 | | Vidjil || 200.136.108.242 || 12 || 1.0 || 16 | ||
|- | |- | ||
| RNASeq || 64 || 1.0 || 16 | | RNASeq || 10.10.70.114 || 64 || 1.0 || 16 | ||
|- | |- | ||
| RStudio || 65 || 4.0 || 1 | | RStudio || 10.10.70.50 || 65 || 4.0 || 1 | ||
|- | |- | ||
| Bioterium || 12 || 0.1 || 4 | | Bioterium || 192.168.200.241 || 12 || 0.1 || 4 | ||
|- | |- | ||
| Total || 224 || 12.0 || 24 | | Total || || 224 || 12.0 || 24 | ||
|- | |- | ||
|} | |} | ||
| Line 56: | Line 56: | ||
! Name !! IP !! RAM (GB) !! Disk (TB) !! Cores !! Use | ! Name !! IP !! RAM (GB) !! Disk (TB) !! Cores !! Use | ||
|- | |- | ||
| Node1 || 10.10.70.59 || 256 || 7 || | | Node1 || 10.10.70.59 || 256 || 7 || 48 || Migo | ||
|- | |- | ||
| Node2 || 10.10.70.61 || 256 || 7 || | | Node2 || 10.10.70.61 || 256 || 7 || 48 || Drug Screening Dashboards | ||
|- | |- | ||
| Node3 || 10.10.70.62 || 256 || 7 || | | Node3 || 10.10.70.62 || 256 || 7 || 48 || Protein 3D Modeling | ||
|- | |- | ||
| Node4 || 10.10.70.63 || 256 || 7 || | | Node4 || 10.10.70.63 || 256 || 7 || 48 || Drug Screening Processing | ||
|- | |- | ||
| Tirana || 10.10.70.64 || 128 || 65 || 80 || Genomic analyses | | Tirana || 10.10.70.64 || 128 || 65 || 80 || Genomic analyses | ||
|- | |- | ||
|} | |} | ||
Making entire 7 TB disk available on node1-4: | |||
sudo lvm | |||
lvm> vgs | |||
VG #PV #LV #SN Attr VSize VFree | |||
fedora 1 1 0 wz--n- 6.98t 6.97t | |||
lvm> lvcreate -L 6.97t fedora | |||
Rounding up size to full physical extent 6.97 TiB | |||
Logical volume "lvol0" created. | |||
Quit lvm | |||
sudo mkdir -vp /data | |||
sudo mkfs.ext4 /dev/fedora/lvol0 | |||
mke2fs 1.47.0 (5-Feb-2023) | |||
Discarding device blocks: done | |||
Creating filesystem with 1870995456 4k blocks and 233877504 inodes | |||
Filesystem UUID: ac2a59ab-e038-4013-aeb6-bb3889b6720e | |||
Superblock backups stored on blocks: | |||
32768, 98304, 163840, 229376, 294912, 819200, 884736, 1605632, 2654208, | |||
4096000, 7962624, 11239424, 20480000, 23887872, 71663616, 78675968, | |||
102400000, 214990848, 512000000, 550731776, 644972544 | |||
Allocating group tables: done | |||
Writing inode tables: done | |||
Creating journal (262144 blocks): done | |||
Writing superblocks and filesystem accounting information: done | |||
Add the following line to /etc/fstab | |||
/dev/fedora/lvol0 /data ext4 defaults 0 2 | |||
Test with | |||
sudo mount -a | |||
Latest revision as of 19:38, 17 April 2025
| Type of Data | Project | Lab | 2021 | 2022 | 2023 | 2024 | 2025 |
|---|---|---|---|---|---|---|---|
| Raw MRD (MiSeq) | Routine | Molecular Biology | |||||
| Processed MRD (Vidjil) | Routine | Molecular Biology | 0.05 | 0.07 | 0.20 | 0.30 | 0.40 |
| Exome | Precision Medicine | Epigenomics | |||||
| ctDNA | Circular Tumoral DNA | Molecular Biology | |||||
| Methylome | Precision Medicine | Epigenomics | |||||
| Mass spectra | DESI | Leukemia Biology / Pathology | 4 | - | - | - | - |
| Imaging | Drug Screening | Leukemia Biology | 15 | 25 | |||
| Panel | Drug Screening | Leukemia Biology | 0.4 | ||||
| Methylome | Drug Screening | Leukemia Biology | 0.03 | ||||
| RNASeq | Drug Screening | Leukemia Biology | 0.4 | ||||
| Methylome | FINEP | All | 0.5 | ||||
| RNASeq | FINEP | All | 4 | ||||
| Exome | FINEP | All | 8 | ||||
| Total | 4.05 | 0.07 | 15.2 | 26.3 | 12.9 |
| Name | IP | RAM (GB) | Disk (TB) | Processors |
|---|---|---|---|---|
| Vidjil | 200.136.108.242 | 12 | 1.0 | 16 |
| RNASeq | 10.10.70.114 | 64 | 1.0 | 16 |
| RStudio | 10.10.70.50 | 65 | 4.0 | 1 |
| Bioterium | 192.168.200.241 | 12 | 0.1 | 4 |
| Total | 224 | 12.0 | 24 |
| Name | IP | RAM (GB) | Disk (TB) | Cores | Use |
|---|---|---|---|---|---|
| Node1 | 10.10.70.59 | 256 | 7 | 48 | Migo |
| Node2 | 10.10.70.61 | 256 | 7 | 48 | Drug Screening Dashboards |
| Node3 | 10.10.70.62 | 256 | 7 | 48 | Protein 3D Modeling |
| Node4 | 10.10.70.63 | 256 | 7 | 48 | Drug Screening Processing |
| Tirana | 10.10.70.64 | 128 | 65 | 80 | Genomic analyses |
Making entire 7 TB disk available on node1-4:
sudo lvm
lvm> vgs
VG #PV #LV #SN Attr VSize VFree fedora 1 1 0 wz--n- 6.98t 6.97t
lvm> lvcreate -L 6.97t fedora
Rounding up size to full physical extent 6.97 TiB Logical volume "lvol0" created.
Quit lvm
sudo mkdir -vp /data
sudo mkfs.ext4 /dev/fedora/lvol0
mke2fs 1.47.0 (5-Feb-2023) Discarding device blocks: done Creating filesystem with 1870995456 4k blocks and 233877504 inodes Filesystem UUID: ac2a59ab-e038-4013-aeb6-bb3889b6720e Superblock backups stored on blocks: 32768, 98304, 163840, 229376, 294912, 819200, 884736, 1605632, 2654208, 4096000, 7962624, 11239424, 20480000, 23887872, 71663616, 78675968, 102400000, 214990848, 512000000, 550731776, 644972544 Allocating group tables: done Writing inode tables: done Creating journal (262144 blocks): done Writing superblocks and filesystem accounting information: done
Add the following line to /etc/fstab
/dev/fedora/lvol0 /data ext4 defaults 0 2
Test with
sudo mount -a